Cefiler


Amap @ CIRAD

Overview

Measured variables surface, perimeter, width, shape, localisation
Operating system windows, mac, linux
Licence freeware
Automation level automated
Plant requirements any
Export formats csv, xml
Other information Cefiler is part of the ImageJ plugin Toaster

Scientific article(s)

Automatic characterization of the cell organization in light microscopic images of wood: Application to the identification of the cell file
Guilhem Brunel, Philippe Borianne, Gerard Subsol, Marc Jaeger, Yves Caraglio
2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, 2017 View paper

Description

Cefiler is a fully-automated plugin devoted to the identification of cell files provided by light microscopic images. This module allows cellular type (vessel, fiber, parenchyma,…) to be defined and the geometry of each cell (wall or/and lumen area, wall thickness, circularity,…) to be characterized. The numerical results are saved in csv or xml files readable onto Clinex®.


Source: Cefiler website

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