HyDE


Plant Biology Laboratory @ Salk Institute for Biological Studies

Overview

Measured variables growth, length
Operating system windows, mac, matlab
Licence freeware
Automation level automated
Plant requirements any
Export formats txt
Other information -

Scientific article(s)

Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis
Benjamin Cole, Steve A. Kay, Joanne Chory
The Plant Journal, 2017 View paper

Similar tools

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Description

HyDE (Hypocotyl Determining Engine) is a simple matlab-based program that measures hypocotyl growth in time-series images. The program will output raw length, smoothened length, and growth rate numerical data (though this feature is not implemented yet), as well as avi movies showing where the algorithm has predicted the hypocotyl to be.

Source: HyDE user guide

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