HypoPhen


Computational Biology Group @ University of Lausanne

Overview

Measured variables length, curvature
Operating system mac, windows, linux
Licence freeware
Automation level semi-automated
Plant requirements any
Export formats txt
Other information -

Scientific article(s)

Nuclear Phytochrome A Signaling Promotes Phototropism in Arabidopsis
C. Kami, M. Hersch, M. Trevisan, T. Genoud, A. Hiltbrunner, S. Bergmann, C. Fankhauser
THE PLANT CELL ONLINE, 2017 View paper

Similar tools

Other tools for the analysis of hypocotyl:

Description

Hypophen is an open-source software enabling the semi-automatic phenotyping of growing seedlings from time-lapse images. More precisely, it computes and records the elongation and bending of the seedlings. It is semi-automatic in the sense that manual calibration, verification and adjustments are sometimes needed. For an experienced user, it allows a throughput of about 50 images of 20 hypocotyls in about 10 minutes, given a reasonable image quality.


Source: HypoPhen website

Share your experience

blog comments powered by Disqus